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TL PhD Comprehensive Exam
  • Introduction
  • Tasklist
  • 1. Basics
    • 1.1 Basic Biology Review
    • 1.2 Basic Genetics Review
    • 1.3 Light & Photosynthesis
  • 2. Coral Biology
    • 2.1 Basic Coral Biology
      • 2.1a Food Webs
    • 2.2 Reef Structure
    • 2.3 Growth & Reproduction
    • 2.4 Morphology
    • 2.5 Physiology
    • 2.6 Mixotrophy & Energy
    • 2.7 Symbiosis
    • 2.8 Reef Mortality
      • 2.8a Conservation
  • 3. Ecology & Evolution
    • 3.1 Evolution & Plasticity
    • 3.2 General Ecology
    • 3.3 Species
    • 3.4 Cryptic Species
  • 4. Isotopes
    • 4.1 Isotope Basics
      • 4.1a Instrumentation & methodology
      • 4.1b Environmental O & H
      • 4.1c Environmental C and N
      • 4.1d Organismal Isotopes
    • 4.2 Fractionation in Corals
    • 4.3 Trophic Niche Analysis
    • 4.4 CSIA
      • 4.4a C: Essential vs. Nonessential
      • 4.4b N: Trophic vs. Source
  • 5. Other
    • 5.1 Science & Society
    • 5.2 Stats
  • 6. Summary & Resources
    • 6.1 Glossary
    • 6.2 Resources
    • 6.3 Questions From Exam
    • 6.4 Recommendations & Reflections
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  • Baseline (11)
  • Isotopic Incorporation (11)
  • Physiology (12)
  1. 4. Isotopes
  2. 4.1 Isotope Basics

4.1d Organismal Isotopes

Last updated 1 year ago

Baseline (11)

What was the animal eating?

  • Autotroph baseline values affected by

    • Source of inorganic carbon

      • Marine DIC ~ 2 δ13C

      • Atmospheric CO2 ~ -7 δ13C

    • photosynthetic pathways

      • Photosynthesis prefers 12C because it will diffuse quicker and react quicker

      • C3 plants and marine phytoplankton have similar fractionation

      • Macroagae & seagrasses use C3 but because of their DIC source, they have δ13C values closer to C4

      • C3 plants - fractionation about 20‰ lower than source C

      • C4 plants - fractionation about 6‰ lower than source C

        • Bundle sheath cell makes the process much more efficient

Uses

  • Generalists vs. specialists - generalists may change between C3 and C4 sources depending on availability & season, while specialists only eat certain plants that are all C3 or C4

  • Habitat use - ex. phytoplankton have lower δ13C than benthic algae, so you can use this to assess inshore (benthic) vs offshore (plankton) feeding

Isotopic Incorporation (11)

When was the food consumed?

  • Changes in diet take time to be reflected in tissues

  • Different tissues have different turnover times

    • Metabolically Active

      • breath > Plasma, liver > Muscle, Red blood cells > Bone Collagen

    • Metabolically Inert

      • (short timeframe) Fur, feathers, egg shell, fingernails, breastmilk

      • (Accretionary) Teeth, hair, whiskers, baleen, otoliths

Physiology (12)

How did the animal incorporate the food?

Trophic fractionation

  • Commonly generalized but there are large amounts of variation in these numbers:

  • ∆13C +0.4 ‰ per trophic level

  • ∆15N +3.4 ‰ per trophic level

N - Protein Cycling

  • High dietary protein - convert protein to fat/glucose, high N excretion rates

  • Low dietary protein - essential AA deficiency, use carbs & lipids for non-essential AA synthesis, low N excretion rates

  • Amino Acids

    • The amino acid pool is comprised of protein already in the body, protein from the diet, and the synthesis of new amino acids from synthesis from the diet.

    • AA go into body protein, N compounds (enzymes?), and waste products

    • Transamination - transfer of an amino group from one molecule to another, especially from an amino acid to a keto acid.

      • diet/body protein transformed into alpha-keto acids

    • Deamination - removal of an amino group from an amino acid or other compound

  • Quality of diet

    • a high-quality diet suggests that the AA composition of diet matches consumer so less fractionation will occur

    • herbivore - lower protein content, lower excretion rate, lower ∆15N

    • Carnivore - higher protein, higher excretion, higher TDF

  • Mode of excretion

    • ∆15N highest in Urea producers (mammals) > Uric acid (insects) > Ammonia (fish) > Guanine (arachnids) > Amino acids (babies)

    • Urea excretion is complex in mammals, lots of opportunity for fractionation

  • Nutritional Status

    • starving animal starts to catabolize its own endogenous protein stores

    • Catabolism - the breakdown of body molecules to form simpler ones

    • as animal loses weight its ∆15N decreases

The Omnivore's Dilemma

  • Perfect Mixing - 50/50 split

  • Perfect routing - 100% from one source

Trophic position